PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0280.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 472aa    MW: 52786.2 Da    PI: 7.1315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12295340454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h e+Er+RR+r+N++f  Lr+++P+       K++Ka+ L  A  YIk+L
  SapurV1A.0094s0280.1.p 295 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAATYIKEL 340
                             799***********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4324197IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.28E-14289344No hitNo description
SuperFamilySSF474595.76E-18290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-17295356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-16297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEEILSSSSS SSLMSFAQET SSTLQQRLQF VLHSRPEWWV YSIFWQAAKD AGGRLVLSLG  60
DGHFRGNKKY ASKEGNEQNH SKFGFSLERK SLFNEDMDMD RLVEGDHVAE WYYTLSVTRA  120
FAVGDGILGR AFSSGAFIWL TGDHELQIYD CERVKEARMH GIQTFVCVST PSGVLELGSP  180
DLIGEDWGLV QLAKSVFGAD INAGSVPKQA NQESQPQIPN RTFSNFLDTG MFSSVQKERT  240
SLEKQKESET REEPTGQGRS SSDSGRSDSD AGFTENNTGF KKRGRKPGEK ELPLNHVEAE  300
RQRRERLNHR FYALRSVVPN VSKMDKASLL ADAATYIKEL KSKVNELEGK LRAVSKKSRI  360
SGNANIYDNQ STSTSTMKNH IRPTPNYMSN NQMEVDVKIL GSEALVRVQS PDVNYPAARL  420
MDSLRDLEFP VHHASVSKVK ELVLQDVVIR VPDGLVTEEV MRAAIFQRMQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-23231978192Transcription factor MYC3
4rqw_B2e-23231978192Transcription factor MYC3
4rs9_A2e-23231978192Transcription factor MYC3
4yz6_A2e-23231978192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2835970.0GU283597.1 Populus balsamifera isolate MGR10 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2835990.0GU283599.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836030.0GU283603.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
GenBankGU2836070.0GU283607.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299425.10.0hypothetical protein POPTR_0001s11400g
TrEMBLB9GK720.0B9GK72_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-65bHLH family protein